Standings
Second stage| Pl | W | L | PCT | |||
| 1 | Rochester Red Wings | 66 | 39 | 27 | 396:312 | 0.591 |
| 2 | Scranton/WB | 64 | 37 | 27 | 359:303 | 0.578 |
| 3 | Worcester | 64 | 36 | 28 | 369:311 | 0.563 |
| 4 | Indianapolis Indians | 66 | 37 | 29 | 336:290 | 0.561 |
| 5 | Syracuse Mets | 65 | 36 | 29 | 334:310 | 0.554 |
| 6 | St. Paul | 66 | 36 | 30 | 330:336 | 0.545 |
| 7 | Nashville Sounds | 65 | 35 | 30 | 314:303 | 0.538 |
| 8 | Toledo Mud Hens | 65 | 34 | 31 | 308:305 | 0.523 |
| 9 | Durham Bulls | 65 | 34 | 31 | 295:302 | 0.523 |
| 10 | Gwinnett Stripers | 67 | 35 | 32 | 316:271 | 0.522 |
| 11 | Columbus Clippers | 64 | 33 | 31 | 372:348 | 0.516 |
| 12 | Charlotte Knights | 66 | 34 | 32 | 322:305 | 0.515 |
| 13 | Omaha Storm Chasers | 64 | 31 | 33 | 337:348 | 0.484 |
| 14 | Buffalo Bisons | 64 | 31 | 33 | 344:358 | 0.484 |
| 15 | Lehigh Valley IronPigs | 65 | 30 | 35 | 304:371 | 0.462 |
| 16 | Memphis Redbirds | 66 | 30 | 36 | 325:338 | 0.455 |
| 17 | Jacksonville Jumbo Shrimp | 66 | 28 | 38 | 324:365 | 0.424 |
| 18 | Iowa Cubs | 65 | 27 | 38 | 323:382 | 0.415 |
| 19 | Norfolk Tides | 63 | 26 | 37 | 278:333 | 0.413 |
| 20 | Louisville Bats | 66 | 23 | 43 | 253:340 | 0.348 |
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