Standings
Second stage| Pl | W | L | PCT | |||
| 1 | Rochester Red Wings | 68 | 40 | 28 | 406:323 | 0.588 |
| 2 | Scranton/WB | 66 | 38 | 28 | 370:313 | 0.576 |
| 3 | Indianapolis Indians | 68 | 39 | 29 | 344:292 | 0.574 |
| 4 | Syracuse Mets | 67 | 38 | 29 | 353:321 | 0.567 |
| 5 | Worcester | 66 | 36 | 30 | 375:322 | 0.545 |
| 6 | Durham Bulls | 67 | 36 | 31 | 303:306 | 0.537 |
| 7 | Charlotte Knights | 68 | 36 | 32 | 334:307 | 0.529 |
| 8 | St. Paul | 68 | 36 | 32 | 341:355 | 0.529 |
| 9 | Gwinnett Stripers | 69 | 36 | 33 | 319:275 | 0.522 |
| 10 | Nashville Sounds | 67 | 35 | 32 | 318:311 | 0.522 |
| 11 | Toledo Mud Hens | 67 | 35 | 32 | 320:321 | 0.522 |
| 12 | Columbus Clippers | 66 | 34 | 32 | 388:358 | 0.515 |
| 13 | Lehigh Valley IronPigs | 67 | 32 | 35 | 315:377 | 0.478 |
| 14 | Omaha Storm Chasers | 66 | 31 | 35 | 339:356 | 0.470 |
| 15 | Buffalo Bisons | 66 | 31 | 35 | 346:370 | 0.470 |
| 16 | Memphis Redbirds | 68 | 31 | 37 | 336:344 | 0.456 |
| 17 | Jacksonville Jumbo Shrimp | 68 | 29 | 39 | 328:368 | 0.426 |
| 18 | Iowa Cubs | 67 | 28 | 39 | 339:394 | 0.418 |
| 19 | Norfolk Tides | 65 | 27 | 38 | 284:344 | 0.415 |
| 20 | Louisville Bats | 68 | 24 | 44 | 263:356 | 0.353 |
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