Standings
First stage| Pl | W | L | PCT | |||
| 1 | Lehigh Valley IronPigs | 70 | 46 | 24 | 421:325 | 0.657 |
| 2 | Jacksonville Jumbo Shrimp | 70 | 44 | 26 | 309:281 | 0.629 |
| 3 | Nashville Sounds | 67 | 40 | 27 | 326:251 | 0.597 |
| 4 | Indianapolis Indians | 67 | 39 | 28 | 289:298 | 0.582 |
| 5 | Durham Bulls | 70 | 40 | 30 | 340:269 | 0.571 |
| 6 | Memphis Redbirds | 67 | 38 | 29 | 379:342 | 0.567 |
| 7 | Worcester | 69 | 38 | 31 | 364:322 | 0.551 |
| 8 | Iowa Cubs | 68 | 37 | 31 | 359:303 | 0.544 |
| 9 | Scranton/WB | 67 | 36 | 31 | 367:310 | 0.537 |
| 10 | Toledo Mud Hens | 69 | 35 | 34 | 317:316 | 0.507 |
| 11 | Charlotte Knights | 70 | 34 | 36 | 387:397 | 0.486 |
| 12 | St. Paul | 66 | 31 | 35 | 306:355 | 0.470 |
| 13 | Columbus Clippers | 66 | 30 | 36 | 318:316 | 0.455 |
| 14 | Omaha Storm Chasers | 69 | 31 | 38 | 357:371 | 0.449 |
| 15 | Louisville Bats | 70 | 29 | 41 | 342:372 | 0.414 |
| 16 | Syracuse Mets | 70 | 29 | 41 | 337:382 | 0.414 |
| 17 | Buffalo Bisons | 68 | 28 | 40 | 304:369 | 0.412 |
| 18 | Norfolk Tides | 67 | 27 | 40 | 346:368 | 0.403 |
| 19 | Gwinnett Stripers | 70 | 26 | 44 | 242:324 | 0.371 |
| 20 | Rochester Red Wings | 68 | 23 | 45 | 295:440 | 0.338 |
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