Standings
Second stage| Pl | W | L | PCT | |||
| 1 | Durham Bulls | 25 | 18 | 7 | 140:118 | 0.720 |
| 2 | Scranton/WB | 26 | 17 | 9 | 143:106 | 0.654 |
| 3 | Indianapolis Indians | 28 | 18 | 10 | 154:113 | 0.643 |
| 4 | Toledo Mud Hens | 28 | 16 | 12 | 143:117 | 0.571 |
| 5 | Omaha Storm Chasers | 28 | 16 | 12 | 168:162 | 0.571 |
| 6 | St. Paul | 28 | 16 | 12 | 132:135 | 0.571 |
| 7 | Worcester | 27 | 15 | 12 | 159:150 | 0.556 |
| 8 | Gwinnett Stripers | 26 | 14 | 12 | 130:126 | 0.538 |
| 9 | Rochester Red Wings | 28 | 15 | 13 | 162:157 | 0.536 |
| 10 | Buffalo Bisons | 27 | 14 | 13 | 160:169 | 0.519 |
| 11 | Charlotte Knights | 28 | 14 | 14 | 154:135 | 0.500 |
| 12 | Lehigh Valley IronPigs | 27 | 13 | 14 | 152:144 | 0.481 |
| 13 | Iowa Cubs | 28 | 13 | 15 | 176:165 | 0.464 |
| 14 | Nashville Sounds | 28 | 13 | 15 | 131:140 | 0.464 |
| 15 | Syracuse Mets | 27 | 12 | 15 | 140:141 | 0.444 |
| 16 | Columbus Clippers | 28 | 12 | 16 | 127:150 | 0.429 |
| 17 | Memphis Redbirds | 28 | 11 | 17 | 140:163 | 0.393 |
| 18 | Norfolk Tides | 26 | 9 | 17 | 89:120 | 0.346 |
| 19 | Jacksonville Jumbo Shrimp | 27 | 9 | 18 | 131:155 | 0.333 |
| 20 | Louisville Bats | 28 | 9 | 19 | 97:154 | 0.321 |
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