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1/32-finals
1/16-finals
1/8-finals
Quarter-finals
Semi-finals
Final
2006/07
1/32-finals
| 1 | D. Zagreb | Bye | |
| 2 | Nova Ves | Grobnican | 0 : 5 |
| 3 | Medjimurje Cakovec | Pleternica | 2 : 0 |
| 4 | Bye | Sibenik | |
| 5 | Osijek | Bye | |
| 6 | Slavonac CO | Krizevci | 2 : 6 |
| 7 | Bjelovar | Moslavina | 3 : 2 |
| 8 | Bye | Zapresic | |
| 9 | Cibalia | Bye | |
| 10 | Bratstvo | Karlovac | 0 : 1 |
| 11 | NK Pomorac | Bye | |
| 12 | Rudar Labin | Vukovar 1991 | 0 : 3 |
| 13 | Belisce | Bye | |
| 14 | Granicar Zupanja | Croatia Sesvete | 2 : 3 |
| 15 | Zdralovi | Samobor | 4 : 0 |
| 16 | Bye | Hajduk Split | |
| 17 | Rijeka | Bye | |
| 18 | Palovec | NK Dakovo | 0 : 1 |
| 19 | Jaska Vinogradar | Medulin | 3 : 2 |
| 20 | Novalja | Dragovoljac | |
| 21 | Segesta | Vodice | 3 : 2 |
| 22 | Bye | Zadar | |
| 23 | Varazdin | Bye | |
| 24 | Zagorec K. | Konavljanin | 0 : 4 |
| 25 | NK Zagreb | Bye | |
| 26 | Dragovoljac | Novalja | 1 : 3 |
| 27 | Podravina Ludbreg | Lucko | 2 : 1 |
| 28 | Bye | NK Kamen Ingrad | |
| 29 | Hrvace | Oriolik | 4 : 3 |
| 30 | Bye | Istra 1961 | |
| 31 | Koprivnica | Metalac Osijek | 2 : 1 |
| 32 | Bye | Slaven Belupo |
1/16-finals
| 1 | D. Zagreb | Grobnican | 2 : 0 |
| 2 | Medjimurje Cakovec | Sibenik | 1 : 4 |
| 3 | Osijek | Krizevci | 5 : 2 |
| 4 | Bjelovar | Zapresic | 0 : 3 |
| 5 | Cibalia | Karlovac | 1 : 0 |
| 6 | NK Pomorac | Vukovar 1991 | 1 : 2 |
| 7 | Belisce | Croatia Sesvete | 3 : 2 |
| 8 | Zdralovi | Hajduk Split | 0 : 3 |
| 9 | Rijeka | NK Dakovo | 2 : 1 |
| 10 | Jaska Vinogradar | Dragovoljac | 1 : 2 |
| 11 | Segesta | Zadar | 3 : 1 |
| 12 | Varazdin | Konavljanin | 1 : 2 |
| 13 | NK Zagreb | Novalja | 4 : 0 |
| 14 | Podravina Ludbreg | NK Kamen Ingrad | 1 : 4 |
| 15 | Hrvace | Istra 1961 | 2 : 1 |
| 16 | Koprivnica | Slaven Belupo | 0 : 2 |
1/8-finals
| 1 | D. Zagreb | Sibenik | 3 : 0 |
| 2 | Osijek | Zapresic | 1 : 3 |
| 3 | Cibalia | Vukovar 1991 | 2 : 0 |
| 4 | Belisce | Hajduk Split | 2 : 5 |
| 5 | Rijeka | Dragovoljac | 1 : 0 |
| 6 | Segesta | Konavljanin | 0 : 2 |
| 7 | NK Zagreb | NK Kamen Ingrad | 2 : 1 |
| 8 | Hrvace | Slaven Belupo | 2 : 4 |
Quarter-finals
| 1 | D. Zagreb | Zapresic | 2 : 1, 2 : 1 |
| 2 | Cibalia | Hajduk Split | 2 : 3, 2 : 3 |
| 3 | Rijeka | Konavljanin | 1 : 2, 3 : 1 |
| 4 | NK Zagreb | Slaven Belupo | 2 : 3, 0 : 6 |
Semi-finals
| 1 | D. Zagreb | Hajduk Split | 2 : 2, 1 : 0 |
| 2 | Rijeka | Slaven Belupo | 2 : 3, 0 : 0 |
Final
| 1 | D. Zagreb | Slaven Belupo | 1 : 1, 1 : 0 |
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