Standings
Second stage| Pl | W | L | PCT | |||
| 1 | Scranton/WB | 14 | 11 | 3 | 93:57 | 0.786 |
| 2 | Syracuse Mets | 15 | 11 | 4 | 83:51 | 0.733 |
| 3 | Indianapolis Indians | 15 | 11 | 4 | 88:63 | 0.733 |
| 4 | Charlotte Knights | 14 | 9 | 5 | 79:61 | 0.643 |
| 5 | Durham Bulls | 13 | 8 | 5 | 61:55 | 0.615 |
| 6 | Jacksonville Jumbo Shrimp | 14 | 8 | 6 | 73:55 | 0.571 |
| 7 | Nashville Sounds | 15 | 8 | 7 | 83:89 | 0.533 |
| 8 | St. Paul | 15 | 8 | 7 | 59:66 | 0.533 |
| 9 | Toledo Mud Hens | 15 | 8 | 7 | 65:84 | 0.533 |
| 10 | Lehigh Valley IronPigs | 14 | 7 | 7 | 76:88 | 0.500 |
| 11 | Louisville Bats | 15 | 7 | 8 | 83:81 | 0.467 |
| 12 | Columbus Clippers | 15 | 7 | 8 | 77:77 | 0.467 |
| 13 | Gwinnett Stripers | 15 | 7 | 8 | 53:57 | 0.467 |
| 14 | Iowa Cubs | 15 | 6 | 9 | 96:91 | 0.400 |
| 15 | Rochester Red Wings | 15 | 6 | 9 | 75:94 | 0.400 |
| 16 | Norfolk Tides | 13 | 5 | 8 | 48:57 | 0.385 |
| 17 | Memphis Redbirds | 15 | 5 | 10 | 80:90 | 0.333 |
| 18 | Omaha Storm Chasers | 15 | 5 | 10 | 85:104 | 0.333 |
| 19 | Buffalo Bisons | 15 | 5 | 10 | 71:95 | 0.333 |
| 20 | Worcester | 15 | 4 | 11 | 64:77 | 0.267 |
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