Standings
First stage| Pl | W | L | PCT | |||
| 1 | Memphis Redbirds | 45 | 27 | 18 | 240:237 | 0.600 |
| 2 | Nashville Sounds | 45 | 26 | 19 | 230:197 | 0.578 |
| 3 | Louisville Bats | 45 | 26 | 19 | 275:254 | 0.578 |
| 4 | Gwinnett Stripers | 45 | 26 | 19 | 229:212 | 0.578 |
| 5 | Rochester Red Wings | 45 | 25 | 20 | 208:215 | 0.556 |
| 6 | Scranton/WB | 43 | 23 | 20 | 226:201 | 0.535 |
| 7 | Worcester | 43 | 23 | 20 | 229:208 | 0.535 |
| 8 | Jacksonville Jumbo Shrimp | 45 | 24 | 21 | 224:199 | 0.533 |
| 9 | St. Paul | 44 | 23 | 21 | 255:248 | 0.523 |
| 10 | Syracuse Mets | 44 | 23 | 21 | 200:213 | 0.523 |
| 11 | Buffalo Bisons | 45 | 23 | 22 | 211:184 | 0.511 |
| 12 | Columbus Clippers | 45 | 23 | 22 | 265:272 | 0.511 |
| 13 | Charlotte Knights | 45 | 22 | 23 | 293:235 | 0.489 |
| 14 | Toledo Mud Hens | 45 | 22 | 23 | 241:209 | 0.489 |
| 15 | Omaha Storm Chasers | 44 | 21 | 23 | 193:223 | 0.477 |
| 16 | Lehigh Valley IronPigs | 45 | 20 | 25 | 212:255 | 0.444 |
| 17 | Durham Bulls | 45 | 19 | 26 | 213:248 | 0.422 |
| 18 | Iowa Cubs | 44 | 18 | 26 | 252:281 | 0.409 |
| 19 | Indianapolis Indians | 45 | 18 | 27 | 212:228 | 0.400 |
| 20 | Norfolk Tides | 45 | 18 | 27 | 191:253 | 0.400 |
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