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Promotion ~ Champions League (Qualification: )
Promotion ~ UEFA Cup
Promotion ~ Intertoto Cup
Promotion ~ 1. HNL (Championship Group: )
Promotion ~ 1. HNL (Relegation Group: )
Relegation
1998/99 Championship Group
| Pl | W | D | L | Diff | Pts | |||
| 1 | D. Zagreb | 10 | 5 | 3 | 2 | 11:6 | 5 | 45 |
| 2 | Rijeka | 10 | 5 | 3 | 2 | 18:15 | 3 | 44 |
| 3 | Hajduk Split | 10 | 5 | 3 | 2 | 24:15 | 9 | 39 |
| 4 | Osijek | 10 | 3 | 3 | 4 | 14:16 | -2 | 30 |
| 5 | Dragovoljac | 10 | 3 | 1 | 6 | 15:21 | -6 | 23 |
| 6 | Varazdin | 10 | 2 | 1 | 7 | 10:19 | -9 | 22 |
Promotion ~ Champions League (Qualification: )
Promotion ~ UEFA Cup
Promotion ~ Intertoto Cup
1998/99 Main
| Pl | W | D | L | Diff | Pts | |||
| 1 | D. Zagreb | 22 | 17 | 2 | 3 | 44:14 | 30 | 53 |
| 2 | Rijeka | 22 | 17 | 1 | 4 | 35:18 | 17 | 52 |
| 3 | Hajduk Split | 22 | 12 | 6 | 4 | 38:17 | 21 | 42 |
| 4 | Osijek | 22 | 11 | 3 | 8 | 37:23 | 14 | 36 |
| 5 | Varazdin | 22 | 8 | 4 | 10 | 37:34 | 3 | 28 |
| 6 | Dragovoljac | 22 | 6 | 7 | 9 | 17:23 | -6 | 25 |
| 7 | Sibenik | 22 | 7 | 3 | 12 | 27:45 | -18 | 24 |
| 8 | Cibalia | 22 | 6 | 5 | 11 | 22:29 | -7 | 23 |
| 9 | NK Zagreb | 22 | 5 | 8 | 9 | 28:37 | -9 | 23 |
| 10 | Slaven Belupo | 22 | 5 | 7 | 10 | 22:34 | -12 | 22 |
| 11 | Zadar | 22 | 5 | 6 | 11 | 27:40 | -13 | 21 |
| 12 | Suhopolje | 22 | 5 | 4 | 13 | 22:42 | -20 | 19 |
Promotion ~ 1. HNL (Championship Group: )
Promotion ~ 1. HNL (Relegation Group: )
1998/99 Relegation Group
| Pl | W | D | L | Diff | Pts | |||
| 1 | Slaven Belupo | 10 | 5 | 3 | 2 | 15:7 | 8 | 29 |
| 2 | Sibenik | 10 | 5 | 2 | 3 | 21:14 | 7 | 29 |
| 3 | Cibalia | 10 | 4 | 2 | 4 | 12:15 | -3 | 26 |
| 4 | NK Zagreb | 10 | 4 | 1 | 5 | 19:16 | 3 | 25 |
| 5 | Zadar | 10 | 4 | 1 | 5 | 13:14 | -1 | 24 |
| 6 | Suhopolje | 10 | 2 | 3 | 5 | 8:22 | -14 | 19 |
Relegation
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