2021 Championship Group
| Pl | W | D | L | Diff | Pts | |||
| 1 | Levadia | 32 | 25 | 3 | 4 | 84:38 | 46 | 78 |
| 2 | Flora | 32 | 23 | 8 | 1 | 90:23 | 67 | 77 |
| 3 | Paide | 32 | 18 | 8 | 6 | 66:35 | 31 | 62 |
| 4 | Kalju | 32 | 13 | 6 | 13 | 57:44 | 13 | 45 |
| 5 | Legion | 32 | 11 | 7 | 14 | 49:48 | 1 | 40 |
| 6 | Narva | 32 | 9 | 6 | 17 | 36:61 | -25 | 33 |
Promotion ~ Champions League (Preliminary: )
Promotion ~ Europa Conference League (Qualification: )
2021 Main
| Pl | W | D | L | Diff | Pts | |||
| 1 | Levadia | 27 | 22 | 1 | 4 | 75:33 | 42 | 67 |
| 2 | Flora | 27 | 19 | 7 | 1 | 80:21 | 59 | 64 |
| 3 | Paide | 27 | 15 | 8 | 4 | 52:27 | 25 | 53 |
| 4 | Kalju | 27 | 13 | 4 | 10 | 51:34 | 17 | 43 |
| 5 | Legion | 27 | 11 | 5 | 11 | 45:36 | 9 | 38 |
| 6 | Narva | 27 | 8 | 5 | 14 | 33:52 | -19 | 29 |
| 7 | Kuressaare | 27 | 8 | 4 | 15 | 33:46 | -13 | 28 |
| 8 | Tulevik | 27 | 8 | 3 | 16 | 37:57 | -20 | 27 |
| 9 | Tammeka | 27 | 5 | 4 | 18 | 29:69 | -40 | 19 |
| 10 | Parnu JK Vaprus | 27 | 4 | 3 | 20 | 20:80 | -60 | 15 |
Promotion ~ Meistriliiga (Championship Group: )
Meistriliiga (Relegation Group: )
2021 Relegation
Final
| 1 | Tammeka | Tallinna Kalev | 3 : 0, 0 : 0 |
2021 Relegation Group
| Pl | W | D | L | Diff | Pts | |||
| 7 | Kuressaare | 30 | 10 | 4 | 16 | 39:47 | -8 | 34 |
| 8 | Tulevik | 30 | 9 | 3 | 18 | 39:62 | -23 | 30 |
| 9 | Tammeka | 30 | 7 | 4 | 19 | 34:72 | -38 | 25 |
| 10 | Parnu JK Vaprus | 30 | 5 | 3 | 22 | 24:88 | -64 | 18 |
Meistriliiga (Relegation)
Relegation
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