2021 Championship Group
| Pl | W | D | L | Diff | Pts | |||
| 1 | Flora W | 24 | 22 | 1 | 1 | 108:11 | 97 | 67 |
| 2 | Saku Sporting W | 24 | 21 | 0 | 3 | 71:25 | 46 | 63 |
| 3 | Tallina Kalev W | 24 | 14 | 0 | 10 | 59:47 | 12 | 42 |
| 4 | Parnu JK Vaprus W | 24 | 11 | 1 | 12 | 54:49 | 5 | 34 |
Promotion ~ Champions League Women (Qualification: )
2021 Main
| Pl | W | D | L | Diff | Pts | |||
| 1 | Flora W | 21 | 19 | 1 | 1 | 97:10 | 87 | 58 |
| 2 | Saku Sporting W | 21 | 19 | 0 | 2 | 63:20 | 43 | 57 |
| 3 | Tallina Kalev W | 21 | 14 | 0 | 7 | 57:37 | 20 | 42 |
| 4 | Parnu JK Vaprus W | 21 | 10 | 1 | 10 | 50:40 | 10 | 31 |
| 5 | Polva Lootos W | 21 | 8 | 1 | 12 | 29:41 | -12 | 25 |
| 6 | Tulevik W | 21 | 6 | 0 | 15 | 34:54 | -20 | 18 |
| 7 | Tammeka Tartu W | 21 | 5 | 2 | 14 | 24:60 | -36 | 17 |
| 8 | Ajax Tallinna W | 21 | 0 | 1 | 20 | 5:97 | -92 | 1 |
Promotion ~ Meistriliiga Women (Championship Group: )
Meistriliiga Women (Relegation Group: )
2021 Relegation Group
| Pl | W | D | L | Diff | Pts | |||
| 1 | Polva Lootos W | 24 | 10 | 2 | 12 | 32:41 | -9 | 32 |
| 2 | Tulevik W | 24 | 8 | 1 | 15 | 38:55 | -17 | 25 |
| 3 | Tammeka Tartu W | 24 | 6 | 2 | 16 | 25:67 | -42 | 20 |
| 4 | Ajax Tallinna W | 24 | 0 | 1 | 23 | 5:97 | -92 | 1 |
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