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1/64-finals
1/32-finals
1/16-finals
1/8-finals
Quarter-finals
Semi-finals
Final
2012/13
1/64-finals
| 1 | Qormi | Bye | |
| 3 | Xewkija | Qala Saints | 5 : 0 |
| 4 | Bye | Pembroke | |
| 5 | Tarxien | Bye | |
| 8 | Bye | Birkirkara | |
| 9 | Gzira | Bye | |
| 10 | Attard | Sirens | 1 : 3 |
| 11 | Mgarr | Bye | |
| 12 | Santa Lucia | Victoria Wanderers | 0 : 3 |
| 13 | Naxxar | Bye | |
| 14 | Bye | Dingli Swallows | |
| 16 | Bye | Balzan | |
| 17 | St. Andrews | Bye | |
| 18 | Bye | Birzebbuga | |
| 19 | Vittoriosa | Bye | |
| 20 | Bye | Msida | |
| 21 | Zurrieq | Bye | |
| 22 | Bye | Fgura | |
| 23 | Kirkop | Bye | |
| 24 | Bye | Mqabba FC | |
| 25 | Floriana | Bye | |
| 28 | Bye | Melita | |
| 29 | Gharghur | Bye | |
| 30 | Xghajra | Mtarfa | 0 : 5 |
| 31 | Siggiewi | Bye | |
| 32 | Bye | Lija | |
| 33 | Valletta | Bye | |
| 36 | Bye | Hamrun | |
| 37 | Zejtun | Bye | |
| 38 | Bye | San Gwann | |
| 39 | Marsaxlokk | Bye | |
| 40 | Gharb | Nadur | 1 : 8 |
| 41 | Sannat Lions | Kalkara | 2 : 0 |
| 42 | Mdina | Swieqi | 1 : 2 |
| 43 | Marsa | Ghaxaq | 2 : 1 |
| 44 | Bye | Zabbar | |
| 45 | Pieta | Bye | |
| 46 | Bye | St. George's FC | |
| 48 | Bye | Rabat Ajax | |
| 49 | Zebbug | Bye | |
| 50 | Bye | Mellieha | |
| 52 | Bye | Sliema | |
| 53 | St. Venera | Bye | |
| 54 | Oratory | Xaghra | 0 : 2 |
| 55 | Luqa | Qrendi | 4 : 1 |
| 56 | Victoria Hotspurs | Marsaskala | 0 : 3 |
| 57 | Gudja | Bye | |
| 58 | Munxar | Xbiex | 1 : 2 |
| 59 | Kercem Ajax | Ghajnsielem | 4 : 2 |
| 60 | St. Lawrence | Senglea | 0 : 2 |
| 61 | Mosta | Bye | |
| 64 | Bye | Hibernians |
1/32-finals
| 1 | Qormi | Bye | |
| 2 | Xewkija | Pembroke | 2 : 3 |
| 3 | Tarxien | Bye | |
| 4 | Bye | Birkirkara | |
| 5 | Gzira | Sirens | 1 : 0 |
| 6 | Mgarr | Victoria Wanderers | 1 : 2 |
| 7 | Naxxar | Dingli Swallows | 4 : 1 |
| 8 | Bye | Balzan | |
| 9 | St. Andrews | Birzebbuga | 2 : 0 |
| 10 | Vittoriosa | Msida | 1 : 2 |
| 11 | Zurrieq | Fgura | 4 : 0 |
| 12 | Kirkop | Mqabba FC | 0 : 3 |
| 13 | Floriana | Bye | |
| 14 | Bye | Melita | |
| 15 | Gharghur | Mtarfa | 4 : 1 |
| 16 | Siggiewi | Lija | 1 : 3 |
| 17 | Valletta | Bye | |
| 18 | Bye | Hamrun | |
| 19 | Zejtun | San Gwann | 3 : 1 |
| 20 | Marsaxlokk | Nadur | 0 : 1 |
| 21 | Sannat Lions | Swieqi | 6 : 1 |
| 22 | Marsa | Zabbar | 1 : 2 |
| 23 | Pieta | St. George's FC | 1 : 0 |
| 24 | Bye | Rabat Ajax | |
| 25 | Zebbug | Mellieha | 3 : 0 |
| 26 | Bye | Sliema | |
| 27 | St. Venera | Xaghra | 3 : 2 |
| 28 | Luqa | Marsaskala | 1 : 3 |
| 29 | Gudja | Xbiex | 6 : 0 |
| 30 | Kercem Ajax | Senglea | 1 : 2 |
| 31 | Mosta | Bye | |
| 32 | Bye | Hibernians |
1/16-finals
| 1 | Qormi | Pembroke | 5 : 2 |
| 2 | Tarxien | Birkirkara | 0 : 1 |
| 3 | Gzira | Victoria Wanderers | 1 : 0 |
| 4 | Naxxar | Balzan | 3 : 4 |
| 5 | St. Andrews | Msida | 2 : 0 |
| 6 | Zurrieq | Mqabba FC | 1 : 2 |
| 7 | Floriana | Melita | 2 : 0 |
| 8 | Gharghur | Lija | 1 : 2 |
| 9 | Valletta | Hamrun | 3 : 1 |
| 10 | Zejtun | Nadur | 1 : 3 |
| 11 | Sannat Lions | Zabbar | 2 : 1 |
| 12 | Pieta | Rabat Ajax | 0 : 1 |
| 13 | Zebbug | Sliema | 2 : 1 |
| 14 | St. Venera | Marsaskala | 1 : 3 |
| 15 | Gudja | Senglea | 2 : 0 |
| 16 | Mosta | Hibernians | 1 : 2 |
1/8-finals
| 1 | Qormi | Birkirkara | 2 : 1 |
| 2 | Gzira | Balzan | 2 : 3 |
| 3 | St. Andrews | Mqabba FC | 4 : 1 |
| 4 | Floriana | Lija | 0 : 1 |
| 5 | Valletta | Nadur | 2 : 0 |
| 6 | Sannat Lions | Rabat Ajax | 0 : 5 |
| 7 | Zebbug | Marsaskala | 3 : 0 |
| 8 | Gudja | Hibernians | 0 : 4 |
Quarter-finals
| 1 | Qormi | Balzan | 1 : 0 |
| 2 | St. Andrews | Lija | 0 : 1 |
| 3 | Valletta | Rabat Ajax | 3 : 0 |
| 4 | Zebbug | Hibernians | 0 : 3 |
Semi-finals
| 1 | Qormi | Lija | 1 : 0 |
| 2 | Valletta | Hibernians | 2 : 3 |
Final
| 1 | Qormi | Hibernians | 1 : 3 |
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