Draw
2025/261/8-finals
| 1 | Levadia | RFS | |
| 2 | Iberia 1999 | Malmo FF | |
| 3 | Zalgiris | Hamrun | |
| 4 | Bye | Dyn. Kyiv | |
| 5 | Pafos | Bye | |
| 6 | Bye | Maccabi Tel Aviv | |
| 7 | Vikingur | Lincoln Red Imps | |
| 8 | Bye | Crvena zvezda | |
| 9 | Noah | Buducnost | |
| 10 | Bye | Ferencvaros | |
| 11 | Lech Poznan | Bye | |
| 12 | Egnatia | Breidablik | |
| 13 | FC Copenhagen | Bye | |
| 14 | Drita | Differdange | |
| 15 | Rijeka | Bye | |
| 16 | Ludogorets | Din. Minsk | |
| 17 | TNS | Shkendija | |
| 18 | FCSB | Inter Escaldes | |
| 19 | Slovan Bratislava | Bye | |
| 20 | Virtus | Zrinjski | |
| 21 | Shelbourne | Linfield | |
| 22 | Bye | Qarabag | |
| 23 | KuPS | Milsami | |
| 24 | O. Ljubljana | Kairat Almaty | |
| 25 | Brann | Bye | |
| 26 | Bye | Salzburg | |
| 27 | Plzen | Bye | |
| 28 | Bye | Servette | |
| 29 | Rangers | Bye | |
| 30 | Bye | Panathinaikos |
Quarter-finals
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