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1/32-finals
1/16-finals
1/8-finals
Quarter-finals
Semi-finals
Final
2008/09
1/32-finals
| 1 | D. Zagreb | Bye | |
| 2 | NK Zminj | Gaj Mace | 0 : 2 |
| 3 | Medjimurje Cakovec | Trogir | 3 : 0 |
| 4 | Granicar Zupanja | Dragovoljac | 0 : 1 |
| 5 | Karlovac | Nedelisce | 3 : 1 |
| 6 | Bye | Istra 1961 | |
| 7 | Osijek | Bye | |
| 8 | Bjelovar | Zagora | 2 : 4 |
| 9 | Rijeka | Bye | |
| 10 | Novalja | Metalac Sisak | 0 : 1 |
| 11 | HASK | Bye | |
| 12 | Bye | Zadar | |
| 13 | Zapresic | Bye | |
| 14 | NK Sracinec | Lucko | 1 : 11 |
| 15 | Graficar Vodovod | Garic Garesnica | 4 : 1 |
| 16 | Bye | NK Zagreb | |
| 17 | Cibalia | Bye | |
| 18 | Radnik Krizevci | Suhopolje | 1 : 2 |
| 19 | NK Kamen Ingrad | Bye | |
| 20 | Jaska Vinogradar | Oriolik | 1 : 2 |
| 21 | Varazdin | Bye | |
| 22 | Pleternica | Mladost Cernik | 0 : 2 |
| 23 | Vukovar 1991 | Podravina Ludbreg | 3 : 2 |
| 24 | Bye | NK Pomorac | |
| 25 | Slaven Belupo | Bye | |
| 26 | Croatia Dakovo | Polet Busevec | 1 : 3 |
| 27 | Sibenik | Bye | |
| 28 | Istra Tar | Moslavina | 0 : 7 |
| 29 | Konavljanin | Mladost Molve | 4 : 3 |
| 30 | Bye | Belisce | |
| 31 | Orijent | NK Rastane | 1 : 0 |
| 32 | Bye | Hajduk Split |
1/16-finals
| 1 | D. Zagreb | Gaj Mace | 5 : 1 |
| 2 | Medjimurje Cakovec | Dragovoljac | 0 : 1 |
| 3 | Karlovac | Istra 1961 | 2 : 1 |
| 4 | Osijek | Zagora | 1 : 2 |
| 5 | Rijeka | Metalac Sisak | 6 : 0 |
| 6 | HASK | Zadar | 0 : 3 |
| 7 | Zapresic | Lucko | 5 : 3 |
| 8 | Graficar Vodovod | NK Zagreb | 1 : 3 |
| 9 | Cibalia | Suhopolje | 2 : 1 |
| 10 | NK Kamen Ingrad | Oriolik | 0 : 3 |
| 11 | Varazdin | Mladost Cernik | 1 : 0 |
| 12 | Vukovar 1991 | NK Pomorac | 0 : 1 |
| 13 | Slaven Belupo | Polet Busevec | 2 : 0 |
| 14 | Sibenik | Moslavina | 1 : 2 |
| 15 | Konavljanin | Belisce | 1 : 0 |
| 16 | Orijent | Hajduk Split | 1 : 4 |
1/8-finals
| 1 | D. Zagreb | Dragovoljac | 6 : 0 |
| 2 | Karlovac | Zagora | 1 : 2 |
| 3 | Rijeka | Zadar | 3 : 2 |
| 4 | Zapresic | NK Zagreb | 0 : 2 |
| 5 | Cibalia | Oriolik | 1 : 0 |
| 6 | Varazdin | NK Pomorac | 0 : 2 |
| 7 | Slaven Belupo | Moslavina | 2 : 0 |
| 8 | Konavljanin | Hajduk Split | 0 : 2 |
Quarter-finals
| 1 | D. Zagreb | Zagora | 5 : 1, 2 : 1 |
| 2 | Rijeka | NK Zagreb | 2 : 3, 2 : 2 |
| 3 | Cibalia | NK Pomorac | 2 : 1, 1 : 1 |
| 4 | Slaven Belupo | Hajduk Split | 0 : 1, 0 : 0 |
Semi-finals
| 1 | D. Zagreb | NK Zagreb | 4 : 1, 2 : 0 |
| 2 | Cibalia | Hajduk Split | 0 : 0, 1 : 4 |
Final
| 1 | D. Zagreb | Hajduk Split | 1 : 3, 3 : 0 |
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