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Promotion ~ Champions League (Qualification: )
Promotion ~ Europa League (Qualification: )
Meistriliiga (Relegation)
Relegation ~ Esiliiga
Final
2016 Main
| Pl | W | D | L | Diff | Pts | |||
| 1 | Infonet Tallinn | 36 | 24 | 8 | 4 | 74:33 | 41 | 80 |
| 2 | Levadia | 36 | 24 | 6 | 6 | 77:30 | 47 | 78 |
| 3 | Kalju | 36 | 22 | 9 | 5 | 70:28 | 42 | 75 |
| 4 | Flora | 36 | 21 | 10 | 5 | 96:31 | 65 | 73 |
| 5 | Sillamae | 36 | 14 | 9 | 13 | 65:55 | 10 | 51 |
| 6 | Paide | 36 | 14 | 6 | 16 | 58:61 | -3 | 48 |
| 7 | Tammeka | 36 | 12 | 5 | 19 | 43:65 | -22 | 41 |
| 8 | Narva | 36 | 11 | 8 | 17 | 60:68 | -8 | 41 |
| 9 | Parnu | 36 | 5 | 2 | 29 | 24:98 | -74 | 17 |
| 10 | Rakvere | 36 | 0 | 3 | 33 | 15:113 | -98 | 3 |
Promotion ~ Champions League (Qualification: )
Promotion ~ Europa League (Qualification: )
Meistriliiga (Relegation)
Relegation ~ Esiliiga
2016 Relegation
Final
| 1 | Maardu | Parnu | 3 : 4, 1 : 5 |
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