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1/64-finals
1/32-finals
1/16-finals
1/8-finals
Quarter-finals
Semi-finals
Final
2009/10
1/64-finals
| 1 | Panathinaikos | Bye | |
| 3 | Doxa Dramas | Bye | |
| 4 | Kozani FC | Eordaikos | 0 : 1 |
| 5 | Ergotelis | Bye | |
| 7 | Epanomi | Rouf FC | 2 : 0 |
| 8 | Bye | Pierikos | |
| 9 | AO Trikala | Kastoria | 3 : 0 |
| 10 | Bye | Karditsa | |
| 12 | Bye | Iraklis 1908 | |
| 13 | Panthrakikos | Bye | |
| 15 | Apollon Pontou | Bye | |
| 16 | Pyrsos | Athens Kallithea | 1 : 2 |
| 17 | PAOK | Bye | |
| 19 | AS Giannitsa | Chaidari | 4 : 3 |
| 20 | Bye | OFI Crete | |
| 21 | Olympiacos Piraeus | Bye | |
| 23 | Makedonikos | Filippiada | 2 : 0 |
| 24 | Bye | Panserraikos | |
| 25 | Atromitos | Bye | |
| 27 | Kerkyra | Bye | |
| 28 | Keravnos | Visaltiakos | 1 : 2 |
| 29 | Kalamata | Bye | |
| 30 | Rodos | Korinthos | 0 : 1 |
| 32 | Bye | Giannina | |
| 33 | Kavala | Bye | |
| 35 | Odysseas | Fokikos FC | 1 : 0 |
| 36 | Bye | A. Asteras | |
| 37 | Ionikos | Bye | |
| 38 | Zakynthos | Kranoulas | 0 : 1 |
| 40 | Bye | Levadiakos | |
| 41 | Thrasivoulos | Bye | |
| 42 | Niki Volos | Platanias FC | 3 : 4 |
| 44 | Bye | AEK Athens FC | |
| 45 | Panetolikos | Bye | |
| 46 | Paraskevi | Veria | 0 : 1 |
| 48 | Bye | Panionios | |
| 49 | Xanthi FC | Bye | |
| 51 | Saronikos FC | Thermaikos FC | 3 : 0 |
| 52 | Bye | Ethnikos Piraeus | |
| 53 | AEL Larissa | Bye | |
| 55 | Panargiakos | Vyzas FC | 2 : 1 |
| 56 | Bye | O. Volos | |
| 57 | Asteras Tripolis | Bye | |
| 59 | Panachaiki | Chersonissos | 1 : 0 |
| 60 | Bye | PAE Egaleo | |
| 61 | Aspropirgos | Aias | 3 : 1 |
| 62 | Bye | Diagoras | |
| 64 | Bye | Aris |
1/32-finals
| 1 | Panathinaikos | Bye | |
| 2 | Doxa Dramas | Eordaikos | 1 : 3 |
| 3 | Ergotelis | Bye | |
| 4 | Epanomi | Pierikos | 1 : 2 |
| 5 | AO Trikala | Karditsa | 1 : 0 |
| 6 | Bye | Iraklis 1908 | |
| 7 | Panthrakikos | Bye | |
| 8 | Apollon Pontou | Athens Kallithea | 0 : 3 |
| 9 | PAOK | Bye | |
| 10 | AS Giannitsa | OFI Crete | 0 : 2 |
| 11 | Olympiacos Piraeus | Bye | |
| 12 | Makedonikos | Panserraikos | 0 : 1 |
| 13 | Atromitos | Bye | |
| 14 | Kerkyra | Visaltiakos | 0 : 2 |
| 15 | Kalamata | Korinthos | 3 : 2 |
| 16 | Bye | Giannina | |
| 17 | Kavala | Bye | |
| 18 | Odysseas | A. Asteras | 2 : 3 |
| 19 | Ionikos | Kranoulas | 3 : 1 |
| 20 | Bye | Levadiakos | |
| 21 | Thrasivoulos | Platanias FC | 3 : 2 |
| 22 | Bye | AEK Athens FC | |
| 23 | Panetolikos | Veria | 2 : 0 |
| 24 | Bye | Panionios | |
| 25 | Xanthi FC | Bye | |
| 26 | Saronikos FC | Ethnikos Piraeus | 0 : 1 |
| 27 | AEL Larissa | Bye | |
| 28 | Panargiakos | O. Volos | 0 : 4 |
| 29 | Asteras Tripolis | Bye | |
| 30 | Panachaiki | PAE Egaleo | 0 : 2 |
| 31 | Aspropirgos | Diagoras | 2 : 1 |
| 32 | Bye | Aris |
1/16-finals
| 1 | Panathinaikos | Eordaikos | 3 : 0 |
| 2 | Ergotelis | Pierikos | 2 : 3 |
| 3 | AO Trikala | Iraklis 1908 | 1 : 0 |
| 4 | Panthrakikos | Athens Kallithea | 0 : 1 |
| 5 | PAOK | OFI Crete | 1 : 0 |
| 6 | Olympiacos Piraeus | Panserraikos | 1 : 3 |
| 7 | Atromitos | Visaltiakos | 1 : 0 |
| 8 | Kalamata | Giannina | 0 : 3 |
| 9 | Kavala | A. Asteras | 3 : 0 |
| 10 | Ionikos | Levadiakos | 1 : 2 |
| 11 | Thrasivoulos | AEK Athens FC | 1 : 0 |
| 12 | Panetolikos | Panionios | 0 : 1 |
| 13 | Xanthi FC | Ethnikos Piraeus | 2 : 1 |
| 14 | AEL Larissa | O. Volos | 1 : 2 |
| 15 | Asteras Tripolis | PAE Egaleo | 3 : 0 |
| 16 | Aspropirgos | Aris | 3 : 4 |
1/8-finals
| 1 | Panathinaikos | Pierikos | 2 : 1 |
| 2 | AO Trikala | Athens Kallithea | 1 : 2 |
| 3 | PAOK | Panserraikos | 2 : 0 |
| 4 | Atromitos | Giannina | 0 : 1 |
| 5 | Kavala | Levadiakos | 1 : 0 |
| 6 | Thrasivoulos | Panionios | 0 : 1 |
| 7 | Xanthi FC | O. Volos | 2 : 0 |
| 8 | Asteras Tripolis | Aris | 0 : 2 |
Quarter-finals
| 1 | Panathinaikos | Athens Kallithea | 2 : 0 |
| 2 | PAOK | Giannina | 0 : 4 |
| 3 | Kavala | Panionios | 2 : 1, 0 : 0 |
| 4 | Xanthi FC | Aris | 0 : 3, 1 : 1 |
Semi-finals
| 1 | Panathinaikos | Giannina | 0 : 0, 3 : 1 |
| 2 | Kavala | Aris | 1 : 1, 1 : 3 |
Final
| 1 | Panathinaikos | Aris | 1 : 0 |
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