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1/64-finals
1/32-finals
1/16-finals
1/8-finals
Quarter-finals
Semi-finals
Final
2012/13
1/64-finals
| 1 | Olympiacos Piraeus | Bye | |
| 4 | AO Paniliakos | Panachaiki | 0 : 1 |
| 5 | AEK Athens FC | Bye | |
| 7 | Panegialios FC | Panetolikos | 3 : 1 |
| 8 | Tilikratis L. | Kavala | 0 : 1 |
| 9 | Fostiras | Zakynthos | 4 : 0 |
| 10 | Fokikos FC | AO Chania | 1 : 2 |
| 12 | Bye | Panionios | |
| 13 | Panserraikos | Glyfada | 2 : 1 |
| 14 | Doxa Dramas | Kordeliou | 0 : 1 |
| 16 | Bye | Giannina | |
| 17 | Veria | Bye | |
| 19 | Vyzas FC | Episkopi | 1 : 0 |
| 20 | Kalamata | Thrasivoulos | 1 : 2 |
| 21 | Serres | Rouvas | 3 : 1 |
| 24 | Bye | Xanthi FC | |
| 25 | Apollon Smyrnis | Korinthos | 2 : 1 |
| 28 | Bye | OFI Crete | |
| 29 | Niki Volos | Vataniakos | 1 : 0 |
| 30 | AO Kassiopi | AS Giannitsa | 2 : 3 |
| 32 | Bye | Panthrakikos | |
| 33 | PAOK | Bye | |
| 36 | Ergotelis | Aiginiakos | 1 : 2 |
| 37 | Aris | Bye | |
| 40 | Apollon Pontou | Athens Kallithea | 0 : 1 |
| 41 | Kerkyra | Bye | |
| 43 | Sidirokastro | Epanomi | 2 : 1 |
| 44 | Tsaritsani | Tyrnavos | 0 : 2 |
| 45 | Pierikos | Kranoulas | 1 : 0 |
| 48 | Bye | Levadiakos | |
| 49 | Platanias FC | Bye | |
| 52 | Psachna | Karditsa | 1 : 4 |
| 53 | Proodeftiki | Iraklis 1908 | 1 : 0 |
| 56 | Bye | Panathinaikos | |
| 57 | O. Volos | Magoulas | 2 : 1 |
| 58 | E. Asteras | Kalloni | 1 : 2 |
| 60 | Bye | Atromitos | |
| 61 | AEL Larissa | Acharnaikos | 1 : 0 |
| 64 | Bye | Asteras Tripolis |
1/32-finals
| 1 | Olympiacos Piraeus | Bye | |
| 2 | Bye | Panachaiki | |
| 3 | AEK Athens FC | Bye | |
| 4 | Panegialios FC | Kavala | 0 : 2 |
| 5 | Fostiras | AO Chania | 1 : 0 |
| 6 | Bye | Panionios | |
| 7 | Panserraikos | Kordeliou | 2 : 1 |
| 8 | Bye | Giannina | |
| 9 | Veria | Bye | |
| 10 | Vyzas FC | Thrasivoulos | 0 : 1 |
| 11 | Serres | Bye | |
| 12 | Bye | Xanthi FC | |
| 13 | Apollon Smyrnis | Bye | |
| 14 | Bye | OFI Crete | |
| 15 | Niki Volos | AS Giannitsa | 1 : 0 |
| 16 | Bye | Panthrakikos | |
| 17 | PAOK | Bye | |
| 18 | Bye | Aiginiakos | |
| 19 | Aris | Bye | |
| 20 | Bye | Athens Kallithea | |
| 21 | Kerkyra | Bye | |
| 22 | Sidirokastro | Tyrnavos | 1 : 4 |
| 23 | Pierikos | Bye | |
| 24 | Bye | Levadiakos | |
| 25 | Platanias FC | Bye | |
| 26 | Bye | Karditsa | |
| 27 | Proodeftiki | Bye | |
| 28 | Bye | Panathinaikos | |
| 29 | O. Volos | Kalloni | 2 : 1 |
| 30 | Bye | Atromitos | |
| 31 | AEL Larissa | Bye | |
| 32 | Bye | Asteras Tripolis |
1/16-finals
| 1 | Olympiacos Piraeus | Panachaiki | 3 : 0, 2 : 0 |
| 2 | AEK Athens FC | Kavala | 0 : 1, 0 : 0 |
| 3 | Fostiras | Panionios | 1 : 2, 1 : 0 |
| 4 | Panserraikos | Giannina | 0 : 2, 0 : 1 |
| 5 | Veria | Thrasivoulos | 2 : 0, 0 : 0 |
| 6 | Serres | Xanthi FC | 1 : 2, 1 : 1 |
| 7 | Apollon Smyrnis | OFI Crete | 2 : 0, 0 : 1 |
| 8 | Niki Volos | Panthrakikos | 1 : 1, 0 : 2 |
| 9 | PAOK | Aiginiakos | 2 : 1, 3 : 1 |
| 10 | Aris | Athens Kallithea | 2 : 1, 1 : 3 |
| 11 | Kerkyra | Tyrnavos | 0 : 0, 2 : 0 |
| 12 | Pierikos | Levadiakos | 0 : 5, 0 : 2 |
| 13 | Platanias FC | Karditsa | 1 : 0, 3 : 1 |
| 14 | Proodeftiki | Panathinaikos | 1 : 2, 0 : 4 |
| 15 | O. Volos | Atromitos | 2 : 2, 1 : 1 |
| 16 | AEL Larissa | Asteras Tripolis | 1 : 4, 0 : 0 |
1/8-finals
| 1 | Olympiacos Piraeus | Kavala | 1 : 0, 2 : 0 |
| 2 | Fostiras | Giannina | 2 : 3, 0 : 2 |
| 3 | Veria | Xanthi FC | 2 : 0, 2 : 1 |
| 4 | Apollon Smyrnis | Panthrakikos | 1 : 4, 1 : 1 |
| 5 | PAOK | Athens Kallithea | 6 : 0, 0 : 2 |
| 6 | Kerkyra | Levadiakos | 0 : 1, 1 : 2 |
| 7 | Platanias FC | Panathinaikos | 1 : 0, 1 : 2 |
| 8 | O. Volos | Asteras Tripolis | 0 : 2, 1 : 1 |
Quarter-finals
| 1 | Olympiacos Piraeus | Giannina | 2 : 0, 1 : 0 |
| 2 | Veria | Panthrakikos | 0 : 1, 0 : 1 |
| 3 | PAOK | Levadiakos | 0 : 0, 2 : 0 |
| 4 | Platanias FC | Asteras Tripolis | 1 : 3, 1 : 2 |
Semi-finals
| 1 | Olympiacos Piraeus | Panthrakikos | 2 : 1, 6 : 2 |
| 2 | PAOK | Asteras Tripolis | 0 : 2, 2 : 1 |
Final
| 1 | Olympiacos Piraeus | Asteras Tripolis | 3 : 1 |
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