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1/16-finals
1/8-finals
Quarter-finals
Semi-finals
Final
Quarter-finals
Semi-finals
Final
2016/17 Main
1/16-finals
| 1 | Lokomotiv Moscow | Khimki | 3 : 0 |
| 2 | Shinnik Yaroslavl | Krylya Sovetov | 0 : 2 |
| 3 | Dynamo Moscow | FK Rostov | 4 : 0 |
| 4 | Arsenal Tula | Tosno | 0 : 2 |
| 5 | Ufa | Energomash Belgorod | 2 : 1 |
| 6 | Fakel Voronezh | Akhmat Grozny | 1 : 2 |
| 7 | Zenit | Tambov | 5 : 0 |
| 8 | FK Saransk | FK Anzi Makhackala | 1 : 2 |
| 9 | Ural | Chelyabinsk | 3 : 0 |
| 10 | Ulyanovsk | Amkar | 0 : 1 |
| 11 | Orenburg | Volgar-Astrakhan | 1 : 0 |
| 12 | Spartak Nalchik | Krasnodar | 0 : 2 |
| 13 | FK Novosibirsk | Tomsk | 1 : 0 |
| 14 | CSKA Moscow | Yenisey | 1 : 2 |
| 15 | SKA Khabarovsk | Spartak Moscow | 1 : 0 |
| 16 | Chita | Rubin Kazan | 0 : 1 |
1/8-finals
| 1 | Lokomotiv Moscow | Krylya Sovetov | 3 : 1 |
| 2 | Dynamo Moscow | Tosno | 2 : 3 |
| 3 | Ufa | Akhmat Grozny | 2 : 1 |
| 4 | Zenit | FK Anzi Makhackala | 0 : 4 |
| 5 | Ural | Amkar | 2 : 1 |
| 6 | Orenburg | Krasnodar | 2 : 3 |
| 7 | FK Novosibirsk | Yenisey | 3 : 2 |
| 8 | SKA Khabarovsk | Rubin Kazan | 0 : 1 |
Quarter-finals
| 1 | Lokomotiv Moscow | Tosno | 1 : 0 |
| 2 | Ufa | FK Anzi Makhackala | 1 : 0 |
| 3 | Ural | Krasnodar | 4 : 3 |
| 4 | FK Novosibirsk | Rubin Kazan | 0 : 1 |
Semi-finals
| 1 | Lokomotiv Moscow | Ufa | 1 : 0 |
| 2 | Ural | Rubin Kazan | 2 : 1 |
Final
| 1 | Lokomotiv Moscow | Ural | 2 : 0 |
2016/17 Qualification
Quarter-finals
Semi-finals
| 1 | Baltika | Bye | |
| 2 | Bye | Dynamo Moscow | |
| 3 | Olimp-Dolgoprudny | Dynamo Petersburg | 1 : 0 |
| 4 | Bye | Tosno | |
| 5 | Tekstilshtik | Solaris Moscow | 1 : 0 |
| 6 | Bye | Khimki | |
| 7 | Dnepr Smolensk | Vladimir | 1 : 0 |
| 8 | Bye | Shinnik Yaroslavl | |
| 9 | Kaluga | Vityaz | 5 : 3 |
| 10 | Bye | Tambov | |
| 11 | Torpedo Moscow | D. Bryansk | 2 : 0 |
| 12 | Bye | FK Saransk | |
| 13 | Chernomorets Novorossijsk | Afips | 1 : 0 |
| 14 | Bye | Fakel Voronezh | |
| 15 | Biolog | SKA Rostov | 2 : 0 |
| 16 | Bye | Spartak Nalchik | |
| 17 | Legion Makhachkala | Mashuk | 3 : 0 |
| 18 | Bye | Volgar-Astrakhan | |
| 19 | Chelyabinsk | Kamaz | 2 : 0 |
| 20 | Bye | Neftekhimik | |
| 21 | Ulyanovsk | Syzran | 2 : 1 |
| 22 | Bye | Saratov | |
| 23 | Dynamo Barnaul | Omsk | 2 : 0 |
| 24 | Bye | Yenisey | |
| 25 | Tyumen | Bye | |
| 26 | Bye | FK Novosibirsk | |
| 27 | Sakhalin | Dalstroyindustriya | 2 : 0 |
| 28 | Bye | SKA Khabarovsk | |
| 29 | Chita | Zenit Irkutsk | 5 : 2 |
| 30 | Bye | Luch | |
| 31 | Energomash Belgorod | Lipetsk | 2 : 1 |
| 32 | Bye | Kuban |
Final
| 1 | Baltika | Dynamo Moscow | 1 : 3 |
| 2 | Olimp-Dolgoprudny | Tosno | 0 : 1 |
| 3 | Tekstilshtik | Khimki | 0 : 1 |
| 4 | Dnepr Smolensk | Shinnik Yaroslavl | 0 : 1 |
| 5 | Kaluga | Tambov | 1 : 3 |
| 6 | Torpedo Moscow | FK Saransk | 1 : 2 |
| 7 | Chernomorets Novorossijsk | Fakel Voronezh | 0 : 1 |
| 8 | Biolog | Spartak Nalchik | 0 : 2 |
| 9 | Legion Makhachkala | Volgar-Astrakhan | 1 : 2 |
| 10 | Chelyabinsk | Neftekhimik | 2 : 0 |
| 11 | Ulyanovsk | Saratov | 1 : 0 |
| 12 | Dynamo Barnaul | Yenisey | 0 : 3 |
| 13 | Tyumen | FK Novosibirsk | 0 : 1 |
| 14 | Sakhalin | SKA Khabarovsk | 1 : 2 |
| 15 | Chita | Luch | 1 : 0 |
| 16 | Energomash Belgorod | Kuban | 3 : 0 |
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