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1/32-finals
1/16-finals
1/8-finals
Quarter-finals
Semi-finals
Final
2011
1/32-finals
| 1 | Kyoto | Sagawa Printing | 3 : 0 |
| 2 | Blaublitz | Montedio Yamagata | 0 : 2 |
| 3 | Toyama | Sagan Tosu | 4 : 3 |
| 4 | Tsukuba Univ. | Kashima Antlers | 0 : 2 |
| 5 | Kawasaki Frontale | Takasaki | 2 : 1 |
| 6 | Tokushima | Oita Trinita | 0 : 1 |
| 7 | Fukuoka Univ. | Omiya Ardija | 2 : 1 |
| 8 | Okayama II | Shonan Bellmare | 1 : 2 |
| 9 | Nagoya Grampus | Suzuka Rampole | 6 : 0 |
| 10 | Gifu | Giravanz Kitakyushu | 0 : 1 |
| 11 | Kofu | Machida | 2 : 1 |
| 12 | Tochigi Uva | Kashiwa Reysol | 0 : 2 |
| 13 | Yamaga | Yokohama FC | 2 : 0 |
| 14 | Toyama Shinjo | Albirex Niigata | 0 : 5 |
| 15 | Tochigi SC | Honda Lock | 2 : 1 |
| 16 | Kamatamare | Yokohama F. Marinos | 1 : 3 |
| 17 | Cerezo Osaka | Hokkaido University | 6 : 0 |
| 18 | Kusatsu | Okayama | 0 : 1 |
| 19 | Avispa Fukuoka | Kochi | 3 : 0 |
| 20 | Sony Sendai | Vegalta Sendai | 1 : 2 |
| 21 | Chiba | Dezzola Shimane | 1 : 0 |
| 22 | Fukushima Utd | Iwata | 0 : 3 |
| 23 | Gainare Tottori | Kumamoto | 3 : 0 |
| 24 | Gifu II | Shimizu S-Pulse | 0 : 2 |
| 25 | Urawa Reds | Miyazaki | 4 : 1 |
| 26 | V-Varen Nagasaki | Verdy | 1 : 7 |
| 27 | Sanfrecce Hiroshima | Kanazawa | 4 : 2 |
| 28 | Ryukyu | Ehime | 0 : 2 |
| 29 | Mito | Hokkaido Consadole Sapporo | 3 : 2 |
| 30 | Sagawa Shiga | Gamba Osaka | 0 : 2 |
| 31 | Vissel Kobe | Sumoto | 8 : 0 |
| 32 | Volca Kagoshima | FC Tokyo | 0 : 4 |
1/16-finals
| 1 | Kyoto | Montedio Yamagata | 3 : 2 |
| 2 | Toyama | Kashima Antlers | 1 : 2 |
| 3 | Kawasaki Frontale | Oita Trinita | 4 : 0 |
| 4 | Fukuoka Univ. | Shonan Bellmare | 0 : 3 |
| 5 | Nagoya Grampus | Giravanz Kitakyushu | 1 : 0 |
| 6 | Kofu | Kashiwa Reysol | 1 : 6 |
| 7 | Yamaga | Albirex Niigata | 1 : 0 |
| 8 | Tochigi SC | Yokohama F. Marinos | 0 : 3 |
| 9 | Cerezo Osaka | Okayama | 3 : 0 |
| 10 | Avispa Fukuoka | Vegalta Sendai | 1 : 3 |
| 11 | Chiba | Iwata | 1 : 0 |
| 12 | Gainare Tottori | Shimizu S-Pulse | 0 : 5 |
| 13 | Urawa Reds | Verdy | 2 : 1 |
| 14 | Sanfrecce Hiroshima | Ehime | 0 : 1 |
| 15 | Mito | Gamba Osaka | 3 : 2 |
| 16 | Vissel Kobe | FC Tokyo | 1 : 2 |
1/8-finals
| 1 | Kyoto | Kashima Antlers | 1 : 0 |
| 2 | Kawasaki Frontale | Shonan Bellmare | 0 : 1 |
| 3 | Nagoya Grampus | Kashiwa Reysol | 4 : 3 |
| 4 | Yamaga | Yokohama F. Marinos | 0 : 4 |
| 5 | Cerezo Osaka | Vegalta Sendai | 2 : 1 |
| 6 | Chiba | Shimizu S-Pulse | 0 : 2 |
| 7 | Urawa Reds | Ehime | 3 : 1 |
| 8 | Mito | FC Tokyo | 0 : 1 |
Quarter-finals
| 1 | Kyoto | Shonan Bellmare | 1 : 0 |
| 2 | Nagoya Grampus | Yokohama F. Marinos | 0 : 1 |
| 3 | Cerezo Osaka | Shimizu S-Pulse | 3 : 2 |
| 4 | Urawa Reds | FC Tokyo | 0 : 1 |
Semi-finals
| 1 | Kyoto | Yokohama F. Marinos | 4 : 2 |
| 2 | Cerezo Osaka | FC Tokyo | 0 : 1 |
Final
| 1 | Kyoto | FC Tokyo | 2 : 4 |
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