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1/32-finals
1/16-finals
1/8-finals
Quarter-finals
Semi-finals
Final
2017
1/32-finals
| 1 | Yokohama F. Marinos | Osaka | 3 : 1 |
| 2 | Kyoto | Azul Claro Numazu | 0 : 1 |
| 3 | Gifu | Tokushima | 3 : 0 |
| 4 | Kagoshima Utd | Sanfrecce Hiroshima | 2 : 3 |
| 5 | Nagano | FC Tokyo | 2 : 1 |
| 6 | Imabari | Okayama | 0 : 1 |
| 7 | Shonan Bellmare | Kokushikan Un. | 1 : 0 |
| 8 | Honda FC | Iwata | 2 : 3 |
| 9 | Kawasaki Frontale | Tochigi Uva | 2 : 0 |
| 10 | Renofa Yamaguchi | Kusatsu | 1 : 2 |
| 11 | Iwaki | Hokkaido Consadole Sapporo | 5 : 2 |
| 12 | Giravanz Kitakyushu | Shimizu S-Pulse | 1 : 4 |
| 13 | Gamba Osaka | Verspah Oita | 3 : 0 |
| 14 | Verdy | Chiba | 0 : 1 |
| 15 | Oita Trinita | Machida | 4 : 2 |
| 16 | Urayasu | Kashiwa Reysol | 0 : 1 |
| 17 | Cerezo Osaka | Niigata University | 2 : 0 |
| 18 | Cento Cuore Harima | Albirex Niigata | 1 : 2 |
| 19 | Vanraure | Kofu | 1 : 0 |
| 20 | SRC Hiroshima | Nagoya Grampus | 0 : 6 |
| 21 | Tsukuba Univ. | Vegalta Sendai | 3 : 2 |
| 22 | Miyazaki | Avispa Fukuoka | 2 : 4 |
| 23 | Ehime | Kamatamare | 2 : 1 |
| 24 | Tonan Maebashi | Omiya Ardija | 0 : 3 |
| 25 | Kashima Antlers | Maruyasu Okazaki | 5 : 0 |
| 26 | V-Varen Nagasaki | Montedio Yamagata | 0 : 1 |
| 27 | Kumamoto | Mito | 2 : 1 |
| 28 | Grulla Morioka | Urawa Reds | 2 : 3 |
| 29 | Yamaga | MD Nagasaki | 4 : 0 |
| 30 | Kagura Shimane | Sagan Tosu | 0 : 3 |
| 31 | Kanazawa | Yokohama FC | 2 : 0 |
| 32 | Toyama | Vissel Kobe | 1 : 3 |
1/16-finals
| 1 | Yokohama F. Marinos | Azul Claro Numazu | 4 : 2 |
| 2 | Gifu | Sanfrecce Hiroshima | 1 : 2 |
| 3 | Nagano | Okayama | 1 : 0 |
| 4 | Shonan Bellmare | Iwata | 1 : 4 |
| 5 | Kawasaki Frontale | Kusatsu | 4 : 0 |
| 6 | Iwaki | Shimizu S-Pulse | 0 : 2 |
| 7 | Gamba Osaka | Chiba | 2 : 0 |
| 8 | Oita Trinita | Kashiwa Reysol | 0 : 2 |
| 9 | Cerezo Osaka | Albirex Niigata | 3 : 2 |
| 10 | Vanraure | Nagoya Grampus | 1 : 2 |
| 11 | Tsukuba Univ. | Avispa Fukuoka | 2 : 1 |
| 12 | Ehime | Omiya Ardija | 2 : 3 |
| 13 | Kashima Antlers | Montedio Yamagata | 5 : 0 |
| 14 | Kumamoto | Urawa Reds | 0 : 1 |
| 15 | Yamaga | Sagan Tosu | 2 : 1 |
| 16 | Kanazawa | Vissel Kobe | 1 : 3 |
1/8-finals
Quarter-finals
| 1 | Yokohama F. Marinos | Iwata | 1 : 0 |
| 2 | Kawasaki Frontale | Kashiwa Reysol | 0 : 1 |
| 3 | Cerezo Osaka | Omiya Ardija | 2 : 0 |
| 4 | Kashima Antlers | Vissel Kobe | 1 : 2 |
Semi-finals
| 1 | Yokohama F. Marinos | Kashiwa Reysol | 2 : 1 |
| 2 | Cerezo Osaka | Vissel Kobe | 3 : 1 |
Final
| 1 | Yokohama F. Marinos | Cerezo Osaka | 1 : 2 |
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